STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK83870.1Chromosome partitioning protein. (297 aa)    
Predicted Functional Partners:
SHK83889.1
Chromosome partitioning protein, ParB family; Belongs to the ParB family.
 
 
 0.986
SHK83911.1
Hypothetical protein.
       0.737
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
 
 
 0.660
SHK96105.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
  
  
 0.622
SHK83937.1
Conserved hypothetical protein.
 
     0.568
SHK45372.1
Integrase/recombinase XerD; Belongs to the 'phage' integrase family.
 
   
 0.494
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.493
SHK83850.1
DNA helicase-2 / ATP-dependent DNA helicase PcrA.
  
  
 0.490
SHK83829.1
Acetyltransferase (GNAT) domain-containing protein.
       0.479
SHK06751.1
Iron complex outermembrane recepter protein.
    
   0.455
Your Current Organism:
Rhodothermus profundi
NCBI taxonomy Id: 633813
Other names: DSM 22212, JCM 15944, R. profundi, Rhodothermus profundi Marteinsson et al. 2010, Rhodothermus sp. PRI 2902, strain PRI 2902
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.