STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK84088.1Hypothetical protein. (91 aa)    
Predicted Functional Partners:
SHK60499.1
LexA-binding, inner membrane-associated putative hydrolase.
  
     0.583
SHK16378.1
Glycosyltransferase involved in cell wall bisynthesis.
  
     0.494
SHK62276.1
GDSL-like Lipase/Acylhydrolase.
  
     0.491
lipB
Lipoyl(octanoyl) transferase; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.
  
  
 0.463
SHK84101.1
Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain.
       0.453
SHK35521.1
Polyisoprenoid-binding protein YceI; Belongs to the UPF0312 family.
  
     0.443
SHK05269.1
Protein of unknown function.
  
     0.421
SHK78016.1
Long-chain fatty acid transport protein.
  
     0.403
Your Current Organism:
Rhodothermus profundi
NCBI taxonomy Id: 633813
Other names: DSM 22212, JCM 15944, R. profundi, Rhodothermus profundi Marteinsson et al. 2010, Rhodothermus sp. PRI 2902, strain PRI 2902
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.