STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK86136.1OmpA family protein. (317 aa)    
Predicted Functional Partners:
SHK11604.1
Competence/damage-inducible protein cinA; Belongs to the CinA family.
    
  0.897
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
    
  0.897
guaB
IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
    
 0.896
SHK62079.1
WD40-like Beta Propeller Repeat.
 
 0.871
SHK68682.1
WD40-like Beta Propeller Repeat.
 
 0.864
SHK09098.1
WD40-like Beta Propeller Repeat.
  
 0.836
SHK36901.1
WD40-like Beta Propeller Repeat.
  
 0.836
SHL05998.1
Por secretion system C-terminal sorting domain-containing protein.
  
 
 0.829
SHK70213.1
Hypothetical protein.
    
 0.732
SHL08457.1
Thymidine phosphorylase.
   
 
  0.699
Your Current Organism:
Rhodothermus profundi
NCBI taxonomy Id: 633813
Other names: DSM 22212, JCM 15944, R. profundi, Rhodothermus profundi Marteinsson et al. 2010, Rhodothermus sp. PRI 2902, strain PRI 2902
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.