STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK88118.1Serine/threonine protein phosphatase 1. (218 aa)    
Predicted Functional Partners:
SHK57111.1
Signal transduction histidine kinase.
  
 
 0.923
SHK60707.1
PAS domain S-box-containing protein.
    
 0.917
SHK36804.1
PAS/PAC sensor hybrid histidine kinase.
   
 
 0.822
SHK29728.1
PAS domain S-box-containing protein.
   
 
 0.812
SHK29766.1
PAS domain S-box-containing protein.
   
 
 0.812
SHK61074.1
PAS domain S-box-containing protein.
   
 
 0.812
nusB
NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
       0.773
SHK91696.1
Tfp pilus assembly protein PilF.
   
  0.760
SHK02300.1
PAS domain S-box-containing protein.
 
  
 0.704
SHL05998.1
Por secretion system C-terminal sorting domain-containing protein.
  
  
  0.687
Your Current Organism:
Rhodothermus profundi
NCBI taxonomy Id: 633813
Other names: DSM 22212, JCM 15944, R. profundi, Rhodothermus profundi Marteinsson et al. 2010, Rhodothermus sp. PRI 2902, strain PRI 2902
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.