STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK92368.1Imidazolonepropionase. (440 aa)    
Predicted Functional Partners:
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
  
 
 0.647
SHK34253.1
Protein of unknown function.
  
     0.611
SHK92674.1
Peptidase family M28.
  
     0.607
SHK97466.1
Histidine ammonia-lyase.
  
  
 0.558
SHL04971.1
Zinc carboxypeptidase.
  
     0.546
SHK32377.1
Zinc carboxypeptidase.
  
     0.445
rlmN
23S rRNA m(2)A-2503 methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.
       0.436
SHK97395.1
Formiminoglutamase; Belongs to the arginase family.
  
 
 0.421
SHK92642.1
NRAMP (natural resistance-associated macrophage protein) metal ion transporters.
  
     0.414
SHK85350.1
Dipeptidyl aminopeptidase/acylaminoacyl peptidase.
  
     0.411
Your Current Organism:
Rhodothermus profundi
NCBI taxonomy Id: 633813
Other names: DSM 22212, JCM 15944, R. profundi, Rhodothermus profundi Marteinsson et al. 2010, Rhodothermus sp. PRI 2902, strain PRI 2902
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.