Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHK94637.1 | SHK94664.1 | SAMN04488087_2346 | SAMN04488087_2347 | Hypothetical protein. | Putative signal transducing protein. | 0.741 |
SHK94637.1 | SHK94693.1 | SAMN04488087_2346 | SAMN04488087_2348 | Hypothetical protein. | Phosphatidate cytidylyltransferase; Belongs to the CDS family. | 0.760 |
SHK94637.1 | SHK94723.1 | SAMN04488087_2346 | SAMN04488087_2349 | Hypothetical protein. | Hypothetical protein. | 0.554 |
SHK94637.1 | mutL | SAMN04488087_2346 | SAMN04488087_2350 | Hypothetical protein. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.502 |
SHK94637.1 | tilS | SAMN04488087_2346 | SAMN04488087_2351 | Hypothetical protein. | tRNA(Ile)-lysidine synthase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. | 0.477 |
SHK94664.1 | SHK94637.1 | SAMN04488087_2347 | SAMN04488087_2346 | Putative signal transducing protein. | Hypothetical protein. | 0.741 |
SHK94664.1 | SHK94693.1 | SAMN04488087_2347 | SAMN04488087_2348 | Putative signal transducing protein. | Phosphatidate cytidylyltransferase; Belongs to the CDS family. | 0.804 |
SHK94664.1 | SHK94723.1 | SAMN04488087_2347 | SAMN04488087_2349 | Putative signal transducing protein. | Hypothetical protein. | 0.590 |
SHK94664.1 | mutL | SAMN04488087_2347 | SAMN04488087_2350 | Putative signal transducing protein. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.527 |
SHK94664.1 | tilS | SAMN04488087_2347 | SAMN04488087_2351 | Putative signal transducing protein. | tRNA(Ile)-lysidine synthase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. | 0.505 |
SHK94693.1 | SHK94637.1 | SAMN04488087_2348 | SAMN04488087_2346 | Phosphatidate cytidylyltransferase; Belongs to the CDS family. | Hypothetical protein. | 0.760 |
SHK94693.1 | SHK94664.1 | SAMN04488087_2348 | SAMN04488087_2347 | Phosphatidate cytidylyltransferase; Belongs to the CDS family. | Putative signal transducing protein. | 0.804 |
SHK94693.1 | SHK94723.1 | SAMN04488087_2348 | SAMN04488087_2349 | Phosphatidate cytidylyltransferase; Belongs to the CDS family. | Hypothetical protein. | 0.590 |
SHK94693.1 | mutL | SAMN04488087_2348 | SAMN04488087_2350 | Phosphatidate cytidylyltransferase; Belongs to the CDS family. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.563 |
SHK94693.1 | tilS | SAMN04488087_2348 | SAMN04488087_2351 | Phosphatidate cytidylyltransferase; Belongs to the CDS family. | tRNA(Ile)-lysidine synthase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. | 0.641 |
SHK94723.1 | SHK94637.1 | SAMN04488087_2349 | SAMN04488087_2346 | Hypothetical protein. | Hypothetical protein. | 0.554 |
SHK94723.1 | SHK94664.1 | SAMN04488087_2349 | SAMN04488087_2347 | Hypothetical protein. | Putative signal transducing protein. | 0.590 |
SHK94723.1 | SHK94693.1 | SAMN04488087_2349 | SAMN04488087_2348 | Hypothetical protein. | Phosphatidate cytidylyltransferase; Belongs to the CDS family. | 0.590 |
SHK94723.1 | mutL | SAMN04488087_2349 | SAMN04488087_2350 | Hypothetical protein. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.686 |
SHK94723.1 | tilS | SAMN04488087_2349 | SAMN04488087_2351 | Hypothetical protein. | tRNA(Ile)-lysidine synthase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. | 0.654 |
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