STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK95079.1Two component regulator propeller. (775 aa)    
Predicted Functional Partners:
SHK35628.1
Hypothetical protein.
  
     0.774
SHK94459.1
Peptidase family C25.
  
     0.774
SHK95025.1
Hypothetical protein.
       0.773
ribH
6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.
       0.773
SHK34778.1
Hypothetical protein.
  
     0.746
SHK14347.1
Cell surface protein SprA.
  
     0.742
SHK13214.1
Hypothetical protein.
  
     0.735
SHK94485.1
Long-chain fatty acid transport protein.
  
     0.727
SHK21145.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.703
SHK44174.1
Peptidyl-prolyl cis-trans isomerase SurA.
  
     0.703
Your Current Organism:
Rhodothermus profundi
NCBI taxonomy Id: 633813
Other names: DSM 22212, JCM 15944, R. profundi, Rhodothermus profundi Marteinsson et al. 2010, Rhodothermus sp. PRI 2902, strain PRI 2902
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.