STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK95239.1Hypothetical protein. (468 aa)    
Predicted Functional Partners:
SHK95269.1
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfG subunit.
 
     0.892
SHK95209.1
Thiamine biosynthesis lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
 
     0.820
SHK09098.1
WD40-like Beta Propeller Repeat.
    
 
 0.796
SHK36901.1
WD40-like Beta Propeller Repeat.
    
 
 0.796
SHK62079.1
WD40-like Beta Propeller Repeat.
    
 
 0.796
SHK68682.1
WD40-like Beta Propeller Repeat.
    
 
 0.796
SHK95306.1
Hypothetical protein.
 
     0.695
SHK13989.1
Alginate export.
  
 
 0.601
gpmI
Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
       0.478
SHK20269.1
Do/DeqQ family serine protease.
    
   0.455
Your Current Organism:
Rhodothermus profundi
NCBI taxonomy Id: 633813
Other names: DSM 22212, JCM 15944, R. profundi, Rhodothermus profundi Marteinsson et al. 2010, Rhodothermus sp. PRI 2902, strain PRI 2902
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.