STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK96953.1TonB-linked outer membrane protein, SusC/RagA family. (969 aa)    
Predicted Functional Partners:
SHK91449.1
TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region.
  
 
  0.730
SHK04200.1
Family of unknown function.
  
     0.728
SHK96926.1
Hypothetical protein.
       0.728
SHK13161.1
Protein TonB.
  
   0.717
SHK58360.1
Outer membrane protein assembly factor BamA.
  
     0.681
SHK78016.1
Long-chain fatty acid transport protein.
  
     0.681
SHK72002.1
Surface antigen.
  
     0.677
SHK05193.1
Acetylglutamate kinase.
  
     0.670
SHK05324.1
Protein of unknown function.
  
     0.641
SHL07955.1
Ig-like domain-containing protein.
  
     0.640
Your Current Organism:
Rhodothermus profundi
NCBI taxonomy Id: 633813
Other names: DSM 22212, JCM 15944, R. profundi, Rhodothermus profundi Marteinsson et al. 2010, Rhodothermus sp. PRI 2902, strain PRI 2902
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