Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SHK60670.1 | SHL00565.1 | SAMN04488087_1543 | SAMN04488087_2489 | Putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family. | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.778 |
| SHL00533.1 | SHL00565.1 | SAMN04488087_2488 | SAMN04488087_2489 | Integration host factor subunit beta; Belongs to the bacterial histone-like protein family. | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.567 |
| SHL00533.1 | def | SAMN04488087_2488 | SAMN04488087_2490 | Integration host factor subunit beta; Belongs to the bacterial histone-like protein family. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.480 |
| SHL00565.1 | SHK60670.1 | SAMN04488087_2489 | SAMN04488087_1543 | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family. | 0.778 |
| SHL00565.1 | SHL00533.1 | SAMN04488087_2489 | SAMN04488087_2488 | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Integration host factor subunit beta; Belongs to the bacterial histone-like protein family. | 0.567 |
| SHL00565.1 | SHL00633.1 | SAMN04488087_2489 | SAMN04488087_2491 | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Hypothetical protein. | 0.504 |
| SHL00565.1 | alaS | SAMN04488087_2489 | SAMN04488087_0095 | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.662 |
| SHL00565.1 | def | SAMN04488087_2489 | SAMN04488087_2490 | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.710 |
| SHL00565.1 | miaA | SAMN04488087_2489 | SAMN04488087_1131 | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.569 |
| SHL00565.1 | rpsF | SAMN04488087_2489 | SAMN04488087_0474 | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA. | 0.407 |
| SHL00633.1 | SHL00565.1 | SAMN04488087_2491 | SAMN04488087_2489 | Hypothetical protein. | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.504 |
| SHL00633.1 | def | SAMN04488087_2491 | SAMN04488087_2490 | Hypothetical protein. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.580 |
| alaS | SHL00565.1 | SAMN04488087_0095 | SAMN04488087_2489 | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.662 |
| def | SHL00533.1 | SAMN04488087_2490 | SAMN04488087_2488 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Integration host factor subunit beta; Belongs to the bacterial histone-like protein family. | 0.480 |
| def | SHL00565.1 | SAMN04488087_2490 | SAMN04488087_2489 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.710 |
| def | SHL00633.1 | SAMN04488087_2490 | SAMN04488087_2491 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Hypothetical protein. | 0.580 |
| def | rpsF | SAMN04488087_2490 | SAMN04488087_0474 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA. | 0.944 |
| miaA | SHL00565.1 | SAMN04488087_1131 | SAMN04488087_2489 | tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.569 |
| rpsF | SHL00565.1 | SAMN04488087_0474 | SAMN04488087_2489 | SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA. | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.407 |
| rpsF | def | SAMN04488087_0474 | SAMN04488087_2490 | SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.944 |