STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLX_19440Paraquat-inducible protein B. (323 aa)    
Predicted Functional Partners:
GLX_13540
ABC transporter permease protein.
 
 
 0.770
GLX_13570
Outer membrane lipoprotein.
 
     0.762
GLX_13550
ABC transporter ATP-binding protein.
 
 
 0.743
GLX_14200
Paraquat-inducible protein A.
  
     0.742
GLX_14180
Hypothetical protein.
 
     0.637
GLX_13920
ABC transporter toluene transporter auxiliary component.
 
 
 0.539
GLX_20410
ABC transporter toluene transporter auxiliary component.
 
 
 0.505
GLX_06720
Hypothetical protein.
 
     0.459
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
       0.451
rpsO
SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
       0.411
Your Current Organism:
Komagataeibacter medellinensis
NCBI taxonomy Id: 634177
Other names: Gluconacetobacter medellinensis NBRC 3288, Gluconacetobacter xylinus IFO 3288, Gluconacetobacter xylinus NBRC 3288, K. medellinensis NBRC 3288, Komagataeibacter medellinensis NBRC 3288
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