STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP36800.1Autotransporter secretion outer membrane protein TamA. (703 aa)    
Predicted Functional Partners:
SFP36812.1
Translocation and assembly module TamB.
 
 
 0.998
SFP94477.1
Dicarboxylate transport.
 
 
 0.942
SFP69491.1
Hypothetical protein.
  
     0.618
lptD
LPS-assembly protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
   
 0.592
bamA
Outer membrane protein insertion porin family; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
   
 0.590
SFP37195.1
Peptidyl-prolyl cis-trans isomerase D.
  
     0.588
SFP86525.1
Membrane protein involved in the export of O-antigen and teichoic acid.
  
     0.573
SFP87580.1
DNA-binding transcriptional regulator, MarR family.
       0.548
SFP79262.1
EF hand.
  
     0.534
SFP82881.1
Outer membrane protein OmpA.
 
   
 0.522
Your Current Organism:
Sphingomonas rubra
NCBI taxonomy Id: 634430
Other names: CGMCC 1.9113, JCM 16230, S. rubra, Sphingomonas rubra Huo et al. 2011, Sphingomonas sp. BH3, strain BH3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.