STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP38422.12-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase. (259 aa)    
Predicted Functional Partners:
SFP90049.1
enoyl-CoA hydratase.
 
  0.992
SFP36883.1
Response regulator receiver domain-containing protein.
   
 0.970
SFP36860.1
Signal transduction histidine kinase.
    
 0.966
SFP62105.1
PAS domain S-box-containing protein.
    
 0.966
SFP80637.1
His Kinase A (phospho-acceptor) domain-containing protein.
    
 0.966
SFP90034.1
enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 
0.961
SFP86601.1
3-hydroxybutyryl-CoA dehydrogenase.
 0.938
SFP61161.1
Acyl-CoA dehydrogenase, N-terminal domain.
   
 0.900
SFP84452.1
3-hydroxybutyryl-CoA dehydrogenase.
 0.892
SFP84471.1
enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 
0.884
Your Current Organism:
Sphingomonas rubra
NCBI taxonomy Id: 634430
Other names: CGMCC 1.9113, JCM 16230, S. rubra, Sphingomonas rubra Huo et al. 2011, Sphingomonas sp. BH3, strain BH3
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