STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP41592.1Sulfide:quinone oxidoreductase. (410 aa)    
Predicted Functional Partners:
SFP41579.1
TIGR01244 family protein.
  
  0.995
SFP75564.1
Cytochrome c553.
   
 0.966
SFP83963.1
TIGR01244 family protein.
  
  0.921
SFP55082.1
Glutamate synthase (NADPH/NADH) large chain.
    
 0.897
SFP89303.1
Cystathionine beta-lyase.
   
 0.862
SFP41639.1
Thiol-disulfide isomerase or thioredoxin.
   
 
 0.832
SFP72833.1
Cytochrome P450 / NADPH-cytochrome P450 reductase.
    
 0.830
SFP41513.1
Glyoxylase, beta-lactamase superfamily II.
    
  0.794
SFP41610.1
Hypothetical protein.
       0.794
SFP41695.1
Glyoxylase, beta-lactamase superfamily II.
    
  0.787
Your Current Organism:
Sphingomonas rubra
NCBI taxonomy Id: 634430
Other names: CGMCC 1.9113, JCM 16230, S. rubra, Sphingomonas rubra Huo et al. 2011, Sphingomonas sp. BH3, strain BH3
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