STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP47568.1Two-component system, OmpR family, response regulator. (261 aa)    
Predicted Functional Partners:
SFP36883.1
Response regulator receiver domain-containing protein.
 
 0.999
SFP36860.1
Signal transduction histidine kinase.
 
 0.988
SFP47552.1
Signal transduction histidine kinase.
 
  0.982
SFP33512.1
Hypothetical protein.
 
 
 0.977
SFP80637.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
 0.977
SFP62105.1
PAS domain S-box-containing protein.
  
 0.974
SFP75147.1
Two-component system, chemotaxis family, sensor kinase CheA.
  
 0.964
SFP47257.1
PAS domain S-box-containing protein.
 
 0.955
SFP34866.1
Signal transduction histidine kinase.
 
 
 0.935
SFP61024.1
Signal transduction histidine kinase.
 
  0.889
Your Current Organism:
Sphingomonas rubra
NCBI taxonomy Id: 634430
Other names: CGMCC 1.9113, JCM 16230, S. rubra, Sphingomonas rubra Huo et al. 2011, Sphingomonas sp. BH3, strain BH3
Server load: low (8%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.