STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP49693.1Surfeit locus 1 family protein. (225 aa)    
Predicted Functional Partners:
SFP49676.1
Cytochrome o ubiquinol oxidase operon protein cyoD.
 
     0.946
SFP49621.1
Cytochrome o ubiquinol oxidase subunit 2.
 
   0.939
SFP49643.1
Cytochrome o ubiquinol oxidase subunit 1; Belongs to the heme-copper respiratory oxidase family.
 
 
 0.933
SFP49656.1
Cytochrome o ubiquinol oxidase subunit 3.
 
    0.933
SFP49711.1
Two-component system, sensor histidine kinase RegB.
 
     0.931
SFP49730.1
Two-component system, response regulator RegA.
 
     0.905
SFP49601.1
Predicted arabinose efflux permease, MFS family.
 
     0.872
SFP93348.1
Cytochrome c.
  
  
 0.861
ctaA
Cytochrome c oxidase assembly protein subunit 15; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 2 subfamily.
 
 
 0.808
SFP75610.1
Cytochrome c oxidase subunit I+III; Belongs to the heme-copper respiratory oxidase family.
 
 
 0.805
Your Current Organism:
Sphingomonas rubra
NCBI taxonomy Id: 634430
Other names: CGMCC 1.9113, JCM 16230, S. rubra, Sphingomonas rubra Huo et al. 2011, Sphingomonas sp. BH3, strain BH3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.