STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP56295.1Hypothetical protein. (152 aa)    
Predicted Functional Partners:
SFP78786.1
Hypothetical protein.
  
     0.734
SFP86525.1
Membrane protein involved in the export of O-antigen and teichoic acid.
  
    0.734
SFP93512.1
Hypothetical protein.
  
     0.703
SFP69491.1
Hypothetical protein.
  
    0.701
SFP37505.1
Hypothetical protein.
  
     0.694
SFP61915.1
Hypothetical protein.
  
     0.674
SFP68197.1
Cholesterol transport system auxiliary component.
  
     0.674
SFP78648.1
Lipopolysaccharide export system protein LptC.
  
     0.672
SFP79262.1
EF hand.
  
     0.670
SFP67722.1
Helix-turn-helix domain-containing protein.
  
 
   0.660
Your Current Organism:
Sphingomonas rubra
NCBI taxonomy Id: 634430
Other names: CGMCC 1.9113, JCM 16230, S. rubra, Sphingomonas rubra Huo et al. 2011, Sphingomonas sp. BH3, strain BH3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.