STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP57295.1TonB dependent receptor. (981 aa)    
Predicted Functional Partners:
SFP57283.1
FecR family protein.
 
     0.843
SFP57266.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.810
SFP60966.1
Iron complex outermembrane recepter protein.
  
  
  0.736
SFP99198.1
TonB-dependent Receptor Plug Domain.
  
  
  0.658
SFP99164.1
Iron complex outermembrane recepter protein.
  
     0.632
SFP56697.1
Iron complex outermembrane recepter protein.
  
  
  0.600
SFP56790.1
TonB-dependent receptor.
  
  
  0.597
SFP90454.1
Iron complex outermembrane recepter protein.
  
     0.575
SFP57300.1
Hypothetical protein.
 
     0.534
SFP60987.1
Transcriptional regulator, LacI family.
  
     0.516
Your Current Organism:
Sphingomonas rubra
NCBI taxonomy Id: 634430
Other names: CGMCC 1.9113, JCM 16230, S. rubra, Sphingomonas rubra Huo et al. 2011, Sphingomonas sp. BH3, strain BH3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.