STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP60568.1Sodium/proton antiporter, CPA1 family (TC 2.A.36). (617 aa)    
Predicted Functional Partners:
SFP60586.1
OmpA-OmpF porin, OOP family.
       0.856
SFP45781.1
Hypothetical protein.
   
  0.776
SFP78386.1
EF hand.
   
  0.776
SFP60598.1
Hypothetical protein.
       0.527
SFP60617.1
PAS domain S-box-containing protein.
       0.527
SFP60633.1
Response regulator receiver domain-containing protein.
       0.527
SFP60552.1
Outer membrane cobalamin receptor protein.
       0.526
SFP40212.1
Uncharacterized membrane protein.
 
     0.433
Your Current Organism:
Sphingomonas rubra
NCBI taxonomy Id: 634430
Other names: CGMCC 1.9113, JCM 16230, S. rubra, Sphingomonas rubra Huo et al. 2011, Sphingomonas sp. BH3, strain BH3
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.