STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP67722.1Helix-turn-helix domain-containing protein. (185 aa)    
Predicted Functional Partners:
SFP67703.1
Hypothetical protein.
 
    0.891
SFP61915.1
Hypothetical protein.
  
     0.772
SFP77613.1
Surfeit locus 1 family protein.
  
     0.772
SFP79262.1
EF hand.
  
     0.771
SFP86525.1
Membrane protein involved in the export of O-antigen and teichoic acid.
  
     0.770
SFP37709.1
Hypothetical protein.
  
     0.768
SFP61599.1
Patatin-related protein.
  
     0.765
SFP93512.1
Hypothetical protein.
  
     0.762
SFP36475.1
Protein of unknown function.
  
     0.758
SFP63667.1
Hypothetical protein.
  
     0.758
Your Current Organism:
Sphingomonas rubra
NCBI taxonomy Id: 634430
Other names: CGMCC 1.9113, JCM 16230, S. rubra, Sphingomonas rubra Huo et al. 2011, Sphingomonas sp. BH3, strain BH3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.