STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP72548.13-hydroxypropanoate dehydrogenase. (199 aa)    
Predicted Functional Partners:
SFP72564.1
Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain.
       0.856
SFP95851.1
uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase.
    
 0.765
SFP72541.1
tRNA threonylcarbamoyl adenosine modification protein YeaZ.
  
    0.739
SFP72522.1
Ribosomal-protein-alanine N-acetyltransferase.
       0.736
SFP72570.1
Zinc protease; Belongs to the peptidase M16 family.
       0.622
SFP47116.1
Serine 3-dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 0.616
SFP47675.1
ABC-2 type transport system permease protein.
  
    0.495
SFP80449.1
ABC-2 type transport system permease protein.
  
    0.495
SFP94270.1
ABC-2 type transport system permease protein.
  
    0.495
SFP48470.1
Pimeloyl-ACP methyl ester carboxylesterase.
   
 
  0.493
Your Current Organism:
Sphingomonas rubra
NCBI taxonomy Id: 634430
Other names: CGMCC 1.9113, JCM 16230, S. rubra, Sphingomonas rubra Huo et al. 2011, Sphingomonas sp. BH3, strain BH3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.