STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP87486.1Putative membrane protein. (294 aa)    
Predicted Functional Partners:
SFP87498.1
Dihydropteroate synthase.
       0.699
SFP87478.1
Glyoxylase, beta-lactamase superfamily II.
       0.675
SFP87505.1
Modification methylase; Belongs to the N(4)/N(6)-methyltransferase family.
       0.635
SFP83740.1
Alginate export.
  
     0.584
SFP60851.1
Uncharacterized iron-regulated membrane protein.
  
     0.416
SFP35866.1
Putative salt-induced outer membrane protein.
      
 0.414
SFP83963.1
TIGR01244 family protein.
      
 0.414
rnhB
RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.412
SFP87525.1
Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase.
       0.412
Your Current Organism:
Sphingomonas rubra
NCBI taxonomy Id: 634430
Other names: CGMCC 1.9113, JCM 16230, S. rubra, Sphingomonas rubra Huo et al. 2011, Sphingomonas sp. BH3, strain BH3
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