STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP87925.1Uncharacterized conserved protein YbaA, DUF1428 family. (118 aa)    
Predicted Functional Partners:
SFP87913.1
Glyoxalase superfamily enzyme, possibly 3-demethylubiquinone-9 3-methyltransferase.
 
     0.862
SFP87932.1
Cobaltochelatase CobS subunit.
       0.754
SFP87964.1
Cobaltochelatase CobT subunit.
       0.545
SFP51002.1
Hypothetical protein.
   
    0.454
SFP87121.1
Hypothetical protein.
   
    0.454
SFP87945.1
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
       0.436
SFP87956.1
PIN domain nuclease, a component of toxin-antitoxin system (PIN domain).
       0.436
SFP87978.1
Predicted DNA-binding protein, contains Ribbon-helix-helix (RHH) domain.
       0.436
SFP87984.1
Hypothetical protein.
       0.436
Your Current Organism:
Sphingomonas rubra
NCBI taxonomy Id: 634430
Other names: CGMCC 1.9113, JCM 16230, S. rubra, Sphingomonas rubra Huo et al. 2011, Sphingomonas sp. BH3, strain BH3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.