STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP89648.1CHAP domain-containing protein. (185 aa)    
Predicted Functional Partners:
SFP84075.1
ATP-dependent DNA helicase DinG.
  
     0.634
SFP68805.1
Phasin family protein.
  
     0.545
SFP82812.1
Protein of unknown function.
  
     0.534
SFP89661.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
       0.491
SFP40466.1
Heavy-metal resistance.
  
     0.469
SFP95191.1
Uncharacterized ACR, COG1399.
  
     0.460
SFP56597.1
Hypothetical protein.
  
     0.459
SFP95159.1
Beta-barrel assembly machine subunit BamE.
  
     0.418
Your Current Organism:
Sphingomonas rubra
NCBI taxonomy Id: 634430
Other names: CGMCC 1.9113, JCM 16230, S. rubra, Sphingomonas rubra Huo et al. 2011, Sphingomonas sp. BH3, strain BH3
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.