STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP98116.1Heavy metal efflux pump, CzcA family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1033 aa)    
Predicted Functional Partners:
SFP98136.1
Hypothetical protein.
 
  0.964
SFP40319.1
Membrane fusion protein, cobalt-zinc-cadmium efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  0.885
SFP98108.1
Efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
 
 
  0.830
SFP98073.1
Hypothetical protein.
  
  
 0.785
SFP40308.1
Outer membrane protein, cobalt-zinc-cadmium efflux system.
 
 
  0.770
SFP98090.1
Two-component system, OmpR family, response regulator.
       0.768
SFP98064.1
Uncharacterized membrane-anchored protein.
       0.709
SFP68287.1
RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  0.646
SFP69416.1
HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  0.588
SFP98047.1
Membrane protein DedA, SNARE-associated domain.
       0.576
Your Current Organism:
Sphingomonas rubra
NCBI taxonomy Id: 634430
Other names: CGMCC 1.9113, JCM 16230, S. rubra, Sphingomonas rubra Huo et al. 2011, Sphingomonas sp. BH3, strain BH3
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