STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP99457.1Two component, sigma54 specific, transcriptional regulator, Fis family. (450 aa)    
Predicted Functional Partners:
SFP99468.1
Two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB.
 0.995
SFP36883.1
Response regulator receiver domain-containing protein.
 
 0.943
SFP75147.1
Two-component system, chemotaxis family, sensor kinase CheA.
  
 0.873
SFP33512.1
Hypothetical protein.
 
 0.829
SFP49795.1
Signal transduction histidine kinase.
 
 
 0.826
SFP34866.1
Signal transduction histidine kinase.
 
 0.817
SFP62105.1
PAS domain S-box-containing protein.
 
 0.793
SFP78691.1
RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.786
SFP80637.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
 0.785
SFP36860.1
Signal transduction histidine kinase.
 
 0.778
Your Current Organism:
Sphingomonas rubra
NCBI taxonomy Id: 634430
Other names: CGMCC 1.9113, JCM 16230, S. rubra, Sphingomonas rubra Huo et al. 2011, Sphingomonas sp. BH3, strain BH3
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.