STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH39561.1Hypothetical protein. (154 aa)    
Predicted Functional Partners:
SHH39595.1
Hypothetical protein.
       0.762
SHH39387.1
DNA transposition protein, AAA+ family ATPase.
       0.723
SHH39416.1
Putative transposase.
       0.723
SHH39449.1
Hypothetical protein.
       0.723
SHH39476.1
Hypothetical protein.
       0.723
SHH39503.1
Hypothetical protein.
       0.723
SHH39532.1
Hypothetical protein.
       0.723
SHH39331.1
Hypothetical protein.
       0.584
SHH39356.1
Protein of unknown function.
       0.584
SHH39622.1
Helix-turn-helix.
       0.525
Your Current Organism:
Marisediminitalea aggregata
NCBI taxonomy Id: 634436
Other names: Aestuariibacter aggregatus, Aestuariibacter aggregatus Wang et al. 2010, Alteromonas sp. WH169, CGMCC 1.8995, LMG 25283, LMG:25283, M. aggregata, Marisediminitalea aggregata (Wang et al. 2010) Zhang et al., strain WH169
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.