STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF76263.1Alginate export. (452 aa)    
Predicted Functional Partners:
SHH42220.1
Hypothetical protein.
  
     0.756
SHG41453.1
Pilus assembly protein FimV.
  
   
 0.717
SHG31668.1
CheY chemotaxis protein or a CheY-like REC (receiver) domain.
  
     0.707
SHG07247.1
Outer membrane protein; Belongs to the skp family.
    
 
 0.705
SHF74050.1
VCBS repeat-containing protein.
  
     0.685
SHF73957.1
NHL repeat-containing protein.
  
     0.651
SHF76867.1
Phage integrase family protein.
  
     0.633
SHG38398.1
Hypothetical protein.
  
     0.617
SHF76291.1
Methyl-accepting chemotaxis protein.
       0.610
rplY
Large subunit ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
  
   0.605
Your Current Organism:
Marisediminitalea aggregata
NCBI taxonomy Id: 634436
Other names: Aestuariibacter aggregatus, Aestuariibacter aggregatus Wang et al. 2010, Alteromonas sp. WH169, CGMCC 1.8995, LMG 25283, LMG:25283, M. aggregata, Marisediminitalea aggregata (Wang et al. 2010) Zhang et al., strain WH169
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.