STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF78131.1MSHA biogenesis protein MshE. (602 aa)    
Predicted Functional Partners:
SHF78100.1
MSHA biogenesis protein MshG.
 
 0.992
SHG11921.1
Type IV pilus assembly protein PilC.
 
 0.961
SHF88593.1
General secretion pathway protein F.
 
 0.960
SHF78232.1
MSHA biogenesis protein MshL.
 
  
 0.940
SHF78340.1
Hypothetical protein.
 
 
 
 0.939
SHF78372.1
MSHA biogenesis protein MshI.
 
 
 
 0.930
SHF78038.1
MSHA pilin protein MshB.
 
 0.911
SHF88730.1
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 
 0.905
SHG11950.1
Leader peptidase (prepilin peptidase) / N-methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.890
SHF78006.1
MSHA pilin protein MshA.
 
 0.878
Your Current Organism:
Marisediminitalea aggregata
NCBI taxonomy Id: 634436
Other names: Aestuariibacter aggregatus, Aestuariibacter aggregatus Wang et al. 2010, Alteromonas sp. WH169, CGMCC 1.8995, LMG 25283, LMG:25283, M. aggregata, Marisediminitalea aggregata (Wang et al. 2010) Zhang et al., strain WH169
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.