STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF78441.1Protein of unknown function. (564 aa)    
Predicted Functional Partners:
SHF78473.1
Protein of unknown function.
     0.953
SHG31668.1
CheY chemotaxis protein or a CheY-like REC (receiver) domain.
  
     0.717
SHG41453.1
Pilus assembly protein FimV.
 
     0.674
SHG41903.1
Clan AA aspartic protease, TIGR02281 family.
  
     0.640
SHG64816.1
poly(beta-D-mannuronate) lyase.
  
  
  0.622
SHG64786.1
poly(beta-D-mannuronate) lyase.
  
  
  0.598
SHF86678.1
REJ domain-containing protein.
 
     0.571
SHF78408.1
Maltose O-acetyltransferase.
       0.559
SHG37364.1
Response regulator receiver domain-containing protein.
  
     0.557
SHG70583.1
Cystathionine beta-lyase/cystathionine gamma-synthase.
  
  
  0.552
Your Current Organism:
Marisediminitalea aggregata
NCBI taxonomy Id: 634436
Other names: Aestuariibacter aggregatus, Aestuariibacter aggregatus Wang et al. 2010, Alteromonas sp. WH169, CGMCC 1.8995, LMG 25283, LMG:25283, M. aggregata, Marisediminitalea aggregata (Wang et al. 2010) Zhang et al., strain WH169
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.