STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF79127.1Sugar lactone lactonase YvrE. (292 aa)    
Predicted Functional Partners:
SHF79189.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
  
 0.896
SHF90317.1
DNA-binding transcriptional regulator, IclR family.
      0.824
SHG48115.1
Mannonate dehydratase.
 
  
 0.709
SHH10003.1
Gluconokinase.
 
  
 0.676
SHF79157.1
Hypothetical protein.
       0.664
SHF83591.1
Alcohol dehydrogenase (cytochrome c).
     
 0.630
xylB
Xylulokinase.
 
 
 0.628
tdh
Threonine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-threonine to 2- amino-3-ketobutyrate; Belongs to the zinc-containing alcohol dehydrogenase family.
  
 
 0.608
SHF74820.1
Predicted dehydrogenase.
 
 
 0.606
ilvD
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
    
 0.597
Your Current Organism:
Marisediminitalea aggregata
NCBI taxonomy Id: 634436
Other names: Aestuariibacter aggregatus, Aestuariibacter aggregatus Wang et al. 2010, Alteromonas sp. WH169, CGMCC 1.8995, LMG 25283, LMG:25283, M. aggregata, Marisediminitalea aggregata (Wang et al. 2010) Zhang et al., strain WH169
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