STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF79219.1DNA-binding transcriptional regulator, FadR family. (239 aa)    
Predicted Functional Partners:
SHF79189.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
  
  0.786
SHG13674.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.712
SHG85096.1
GntR family transcriptional regulator, vanillate catabolism transcriptional regulator.
  
  
 0.703
SHF80489.1
Vanillate O-demethylase ferredoxin subunit.
    
  0.607
SHG85157.1
Vanillate O-demethylase ferredoxin subunit.
    
  0.607
SHG86068.1
Vanillate O-demethylase ferredoxin subunit.
    
  0.607
SHG48115.1
Mannonate dehydratase.
     0.583
SHG64530.1
poly(beta-D-mannuronate) lyase.
 
     0.572
SHG64561.1
Alginate lyase.
 
     0.568
SHF79157.1
Hypothetical protein.
 
     0.545
Your Current Organism:
Marisediminitalea aggregata
NCBI taxonomy Id: 634436
Other names: Aestuariibacter aggregatus, Aestuariibacter aggregatus Wang et al. 2010, Alteromonas sp. WH169, CGMCC 1.8995, LMG 25283, LMG:25283, M. aggregata, Marisediminitalea aggregata (Wang et al. 2010) Zhang et al., strain WH169
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.