STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF80933.1Glycosyl-hydrolase 97 C-terminal, oligomerisation. (654 aa)    
Predicted Functional Partners:
SHF80908.1
Beta-xylosidase, GH43 family.
 
     0.837
SHF83929.1
BNR repeat-containing family member.
 
  
 0.789
SHF80606.1
Hypothetical protein.
  
     0.758
SHF80752.1
Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
 
     0.743
SHF80963.1
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
       0.741
SHF87338.1
Protein of unknown function.
 
  
 0.717
SHH24275.1
alpha-D-xyloside xylohydrolase; Belongs to the glycosyl hydrolase 31 family.
 
  
  0.700
SHF86896.1
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
  
     0.694
SHF78816.1
Cellulase (glycosyl hydrolase family 5).
 
  
  0.656
SHF74050.1
VCBS repeat-containing protein.
 
  
 0.648
Your Current Organism:
Marisediminitalea aggregata
NCBI taxonomy Id: 634436
Other names: Aestuariibacter aggregatus, Aestuariibacter aggregatus Wang et al. 2010, Alteromonas sp. WH169, CGMCC 1.8995, LMG 25283, LMG:25283, M. aggregata, Marisediminitalea aggregata (Wang et al. 2010) Zhang et al., strain WH169
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