Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHF81338.1 | SHF81369.1 | SAMN05216361_0488 | SAMN05216361_0489 | acyl-CoA thioester hydrolase. | 2OG-Fe(II) oxygenase superfamily protein. | 0.793 |
SHF81338.1 | SHG05801.1 | SAMN05216361_0488 | SAMN05216361_1121 | acyl-CoA thioester hydrolase. | Acyl carrier protein. | 0.710 |
SHF81338.1 | SHG68915.1 | SAMN05216361_0488 | SAMN05216361_2801 | acyl-CoA thioester hydrolase. | 3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.722 |
SHF81338.1 | SHH10339.1 | SAMN05216361_0488 | SAMN05216361_3784 | acyl-CoA thioester hydrolase. | [acyl-carrier-protein] S-malonyltransferase. | 0.827 |
SHF81338.1 | SHH23667.1 | SAMN05216361_0488 | SAMN05216361_4119 | acyl-CoA thioester hydrolase. | 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase; Catalyzes the formation of a hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3- hydroxyacyl-CoA dehydrogenase activities. Belongs to the enoyl-CoA hydratase/isomerase family. In the central section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family. | 0.722 |
SHF81338.1 | SHH41084.1 | SAMN05216361_0488 | SAMN05216361_0065 | acyl-CoA thioester hydrolase. | Fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family. | 0.722 |
SHF81338.1 | acpP | SAMN05216361_0488 | SAMN05216361_3782 | acyl-CoA thioester hydrolase. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.710 |
SHF81338.1 | fliA | SAMN05216361_0488 | SAMN05216361_1072 | acyl-CoA thioester hydrolase. | RNA polymerase sigma factor for flagellar operon FliA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. | 0.580 |
SHF81338.1 | secA | SAMN05216361_0488 | SAMN05216361_2693 | acyl-CoA thioester hydrolase. | Preprotein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family. | 0.596 |
SHF81338.1 | uvrA | SAMN05216361_0488 | SAMN05216361_0487 | acyl-CoA thioester hydrolase. | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.789 |
SHF81369.1 | SHF81338.1 | SAMN05216361_0489 | SAMN05216361_0488 | 2OG-Fe(II) oxygenase superfamily protein. | acyl-CoA thioester hydrolase. | 0.793 |
SHF81369.1 | uvrA | SAMN05216361_0489 | SAMN05216361_0487 | 2OG-Fe(II) oxygenase superfamily protein. | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.773 |
SHG05801.1 | SHF81338.1 | SAMN05216361_1121 | SAMN05216361_0488 | Acyl carrier protein. | acyl-CoA thioester hydrolase. | 0.710 |
SHG05801.1 | SHG68915.1 | SAMN05216361_1121 | SAMN05216361_2801 | Acyl carrier protein. | 3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.494 |
SHG05801.1 | SHH10339.1 | SAMN05216361_1121 | SAMN05216361_3784 | Acyl carrier protein. | [acyl-carrier-protein] S-malonyltransferase. | 0.991 |
SHG05801.1 | SHH23667.1 | SAMN05216361_1121 | SAMN05216361_4119 | Acyl carrier protein. | 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase; Catalyzes the formation of a hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3- hydroxyacyl-CoA dehydrogenase activities. Belongs to the enoyl-CoA hydratase/isomerase family. In the central section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family. | 0.494 |
SHG05801.1 | SHH41084.1 | SAMN05216361_1121 | SAMN05216361_0065 | Acyl carrier protein. | Fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family. | 0.494 |
SHG05801.1 | secA | SAMN05216361_1121 | SAMN05216361_2693 | Acyl carrier protein. | Preprotein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family. | 0.778 |
SHG68915.1 | SHF81338.1 | SAMN05216361_2801 | SAMN05216361_0488 | 3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family. | acyl-CoA thioester hydrolase. | 0.722 |
SHG68915.1 | SHG05801.1 | SAMN05216361_2801 | SAMN05216361_1121 | 3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family. | Acyl carrier protein. | 0.494 |
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