Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHF74146.1 | SHF82804.1 | SAMN05216361_0250 | SAMN05216361_0544 | RNA polymerase sigma-70 factor, ECF subfamily. | Hypothetical protein. | 0.675 |
SHF74146.1 | SHF82830.1 | SAMN05216361_0250 | SAMN05216361_0545 | RNA polymerase sigma-70 factor, ECF subfamily. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.763 |
SHF74146.1 | SHG44576.1 | SAMN05216361_0250 | SAMN05216361_2273 | RNA polymerase sigma-70 factor, ECF subfamily. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.743 |
SHF74146.1 | SHG59966.1 | SAMN05216361_0250 | SAMN05216361_2523 | RNA polymerase sigma-70 factor, ECF subfamily. | sigma-E factor negative regulatory protein RseA; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplas [...] | 0.746 |
SHF74146.1 | SHG76489.1 | SAMN05216361_0250 | SAMN05216361_3026 | RNA polymerase sigma-70 factor, ECF subfamily. | Anti-sigma-K factor RskA. | 0.557 |
SHF74146.1 | rpoC | SAMN05216361_0250 | SAMN05216361_0156 | RNA polymerase sigma-70 factor, ECF subfamily. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.597 |
SHF82776.1 | SHF82804.1 | SAMN05216361_0543 | SAMN05216361_0544 | Hypothetical protein. | Hypothetical protein. | 0.939 |
SHF82776.1 | SHF82830.1 | SAMN05216361_0543 | SAMN05216361_0545 | Hypothetical protein. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.862 |
SHF82776.1 | SHF82856.1 | SAMN05216361_0543 | SAMN05216361_0546 | Hypothetical protein. | Subtilase family protein. | 0.629 |
SHF82804.1 | SHF74146.1 | SAMN05216361_0544 | SAMN05216361_0250 | Hypothetical protein. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.675 |
SHF82804.1 | SHF82776.1 | SAMN05216361_0544 | SAMN05216361_0543 | Hypothetical protein. | Hypothetical protein. | 0.939 |
SHF82804.1 | SHF82830.1 | SAMN05216361_0544 | SAMN05216361_0545 | Hypothetical protein. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.978 |
SHF82804.1 | SHF82856.1 | SAMN05216361_0544 | SAMN05216361_0546 | Hypothetical protein. | Subtilase family protein. | 0.852 |
SHF82804.1 | SHG44576.1 | SAMN05216361_0544 | SAMN05216361_2273 | Hypothetical protein. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.642 |
SHF82804.1 | SHG73835.1 | SAMN05216361_0544 | SAMN05216361_2948 | Hypothetical protein. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.642 |
SHF82804.1 | SHG76452.1 | SAMN05216361_0544 | SAMN05216361_3025 | Hypothetical protein. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.642 |
SHF82830.1 | SHF74146.1 | SAMN05216361_0545 | SAMN05216361_0250 | RNA polymerase sigma-70 factor, ECF subfamily. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.763 |
SHF82830.1 | SHF82776.1 | SAMN05216361_0545 | SAMN05216361_0543 | RNA polymerase sigma-70 factor, ECF subfamily. | Hypothetical protein. | 0.862 |
SHF82830.1 | SHF82804.1 | SAMN05216361_0545 | SAMN05216361_0544 | RNA polymerase sigma-70 factor, ECF subfamily. | Hypothetical protein. | 0.978 |
SHF82830.1 | SHF82856.1 | SAMN05216361_0545 | SAMN05216361_0546 | RNA polymerase sigma-70 factor, ECF subfamily. | Subtilase family protein. | 0.720 |
page 1 of 4