STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF85178.1Ribosomal protein S18 acetylase RimI. (299 aa)    
Predicted Functional Partners:
SHF85263.1
Glycine/D-amino acid oxidase.
 
     0.839
SHF85773.1
2-haloacid dehalogenase.
 
     0.791
SHF85747.1
Glycine/D-amino acid oxidase.
  
     0.768
SHF85716.1
Peptide/nickel transport system substrate-binding protein.
  
     0.761
SHF85029.1
Hypothetical protein.
 
     0.757
SHF85146.1
Hypothetical protein.
       0.671
SHF85657.1
Peptide/nickel transport system permease protein.
 
     0.633
SHF85803.1
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
     0.572
SHF85207.1
Hippurate hydrolase.
       0.563
SHF85636.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
  
     0.563
Your Current Organism:
Marisediminitalea aggregata
NCBI taxonomy Id: 634436
Other names: Aestuariibacter aggregatus, Aestuariibacter aggregatus Wang et al. 2010, Alteromonas sp. WH169, CGMCC 1.8995, LMG 25283, LMG:25283, M. aggregata, Marisediminitalea aggregata (Wang et al. 2010) Zhang et al., strain WH169
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