STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF86954.1TonB-dependent receptor. (899 aa)    
Predicted Functional Partners:
SHF84879.1
Cupin-like domain-containing protein.
  
     0.724
SHH09850.1
Cupin-like domain-containing protein.
  
     0.720
SHH24334.1
Tryptophan halogenase.
  
     0.718
SHH30990.1
SapC protein.
  
     0.714
SHH09883.1
SapC protein.
  
     0.700
SHF84853.1
SapC protein.
  
     0.699
SHG02175.1
Iron complex outermembrane recepter protein.
  
 
  0.678
SHF81422.1
Xylan 1,4-beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
  
     0.662
SHG76306.1
3-phytase.
 
     0.642
SHG02089.1
Iron complex outermembrane recepter protein.
  
     0.633
Your Current Organism:
Marisediminitalea aggregata
NCBI taxonomy Id: 634436
Other names: Aestuariibacter aggregatus, Aestuariibacter aggregatus Wang et al. 2010, Alteromonas sp. WH169, CGMCC 1.8995, LMG 25283, LMG:25283, M. aggregata, Marisediminitalea aggregata (Wang et al. 2010) Zhang et al., strain WH169
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.