STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF90486.1Hypothetical protein. (906 aa)    
Predicted Functional Partners:
SHF90670.1
Lysophospholipase L1.
  
 
  0.903
SHF90698.1
Lysophospholipase L1.
  
 
  0.893
SHF86984.1
Lysophospholipase L1.
 
 
  0.872
SHF90405.1
Oligogalacturonide lyase.
 
  
  0.860
SHF90461.1
Unsaturated rhamnogalacturonyl hydrolase.
 
     0.857
SHG18389.1
Glycosyl hydrolase family 115.
  
 
  0.844
SHF90725.1
Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
  
  
  0.805
SHF79498.1
Pectate lyase.
  
  
 0.798
SHH31303.1
Glycosyl hydrolase family 115.
  
 
  0.791
SHG44828.1
Hypothetical protein.
 
     0.774
Your Current Organism:
Marisediminitalea aggregata
NCBI taxonomy Id: 634436
Other names: Aestuariibacter aggregatus, Aestuariibacter aggregatus Wang et al. 2010, Alteromonas sp. WH169, CGMCC 1.8995, LMG 25283, LMG:25283, M. aggregata, Marisediminitalea aggregata (Wang et al. 2010) Zhang et al., strain WH169
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