STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhaML-rhamnose mutarotase; Involved in the anomeric conversion of L-rhamnose. (104 aa)    
Predicted Functional Partners:
SHH11355.1
Sugar (pentulose or hexulose) kinase.
 
  
 0.957
SHH11303.1
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
  
 0.888
SHF90587.1
Beta-galactosidase.
 
     0.837
SHH11275.1
L-rhamnose isomerase / sugar isomerase.
 
   
 0.814
xylB
Xylulokinase.
  
  
 0.809
SHH11327.1
DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor.
 
    0.702
SHH11197.1
L-rhamnose-H+ transport protein.
 
   
 0.666
SHF90646.1
Sugar phosphate isomerase/epimerase.
 
    0.619
SHG50441.1
alpha-L-rhamnosidase.
 
    0.617
SHF90618.1
TonB-dependent receptor.
 
     0.610
Your Current Organism:
Marisediminitalea aggregata
NCBI taxonomy Id: 634436
Other names: Aestuariibacter aggregatus, Aestuariibacter aggregatus Wang et al. 2010, Alteromonas sp. WH169, CGMCC 1.8995, LMG 25283, LMG:25283, M. aggregata, Marisediminitalea aggregata (Wang et al. 2010) Zhang et al., strain WH169
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