STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF92449.1DTW domain-containing protein YfiP. (192 aa)    
Predicted Functional Partners:
SHF92418.1
methylated-DNA-protein-cysteine methyltransferase related protein; Manually curated.
       0.569
SHH09665.1
Peptidyl-dipeptidase A.
  
     0.512
SHF71698.1
Lectin C-type domain-containing protein.
  
     0.508
SHH43279.1
Chondroitin 4-sulfotransferase 11/chondroitin 4-sulfotransferase 13/dermatan 4-sulfotransferase 1.
  
     0.476
SHF80807.1
Conserved hypothetical protein; Manually curated.
  
     0.439
Your Current Organism:
Marisediminitalea aggregata
NCBI taxonomy Id: 634436
Other names: Aestuariibacter aggregatus, Aestuariibacter aggregatus Wang et al. 2010, Alteromonas sp. WH169, CGMCC 1.8995, LMG 25283, LMG:25283, M. aggregata, Marisediminitalea aggregata (Wang et al. 2010) Zhang et al., strain WH169
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.