STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG03028.1Helix-turn-helix domain-containing protein. (592 aa)    
Predicted Functional Partners:
SHH09535.1
Endo-1,4-beta-xylanase.
  
     0.756
SHG68731.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.736
SHG85593.1
N-terminal ig-like domain of cellulase.
  
     0.635
SHG71723.1
Esterase, PHB depolymerase family.
  
     0.634
SHH42220.1
Hypothetical protein.
  
     0.607
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.582
SHG85250.1
Helix-turn-helix domain-containing protein.
  
     0.566
SHG76168.1
AraC-type DNA-binding protein.
  
     0.564
SHG88153.1
Glycosyl hydrolases family 2, TIM barrel domain.
  
  
  0.558
SHG40339.1
AraC-type DNA-binding protein.
  
     0.522
Your Current Organism:
Marisediminitalea aggregata
NCBI taxonomy Id: 634436
Other names: Aestuariibacter aggregatus, Aestuariibacter aggregatus Wang et al. 2010, Alteromonas sp. WH169, CGMCC 1.8995, LMG 25283, LMG:25283, M. aggregata, Marisediminitalea aggregata (Wang et al. 2010) Zhang et al., strain WH169
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.