STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG05379.1Transketolase. (309 aa)    
Predicted Functional Partners:
SHG05403.1
Transketolase.
 0.999
SHG05454.1
Pyruvate dehydrogenase E1 component beta subunit.
 
  
  0.926
SHG05471.1
Pyruvate dehydrogenase E1 component alpha subunit.
 
  
  0.916
SHG05431.1
3-oxoacyl-[acyl-carrier protein] reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.815
SHG05260.1
3-oxoacyl-[acyl-carrier protein] reductase.
 
     0.813
SHG05276.1
3-oxoacyl-[acyl-carrier protein] reductase.
 
     0.813
SHG05555.1
Nucleoside-diphosphate-sugar epimerase.
 
     0.812
SHG11681.1
Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase); The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
  
  
  0.804
SHG05495.1
Methyltransferase domain-containing protein.
       0.787
SHG05354.1
Putative zinc binding domain-containing protein.
       0.780
Your Current Organism:
Marisediminitalea aggregata
NCBI taxonomy Id: 634436
Other names: Aestuariibacter aggregatus, Aestuariibacter aggregatus Wang et al. 2010, Alteromonas sp. WH169, CGMCC 1.8995, LMG 25283, LMG:25283, M. aggregata, Marisediminitalea aggregata (Wang et al. 2010) Zhang et al., strain WH169
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