STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG08430.1Putative membrane protein. (138 aa)    
Predicted Functional Partners:
SHG08488.1
Glutathionylspermidine synthase.
 
   0.954
SHG08460.1
Uncharacterized conserved protein YgiB, involved in bioifilm formation, UPF0441/DUF1190 family.
 
    0.952
SHG08374.1
Voltage-gated potassium channel.
 
     0.904
SHG08345.1
Phage shock protein A (PspA) family protein.
 
     0.837
SHG08402.1
Protein of unknown function.
       0.756
SHG08521.1
Rhomboid family protein.
       0.744
SHG08548.1
Hypothetical protein.
       0.730
SHG08312.1
Hypothetical protein.
       0.485
SHH18466.1
Protein of unknown function.
  
     0.479
SHG41903.1
Clan AA aspartic protease, TIGR02281 family.
  
     0.415
Your Current Organism:
Marisediminitalea aggregata
NCBI taxonomy Id: 634436
Other names: Aestuariibacter aggregatus, Aestuariibacter aggregatus Wang et al. 2010, Alteromonas sp. WH169, CGMCC 1.8995, LMG 25283, LMG:25283, M. aggregata, Marisediminitalea aggregata (Wang et al. 2010) Zhang et al., strain WH169
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.