STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG11497.1Putative salt-induced outer membrane protein YdiY. (269 aa)    
Predicted Functional Partners:
SHG11527.1
HD-like signal output (HDOD) domain, no enzymatic activity.
       0.651
SHG02996.1
Outer membrane receptor proteins, mostly Fe transport.
  
     0.581
SHG11472.1
Putative salt-induced outer membrane protein YdiY.
 
    
0.560
SHH32113.1
Outer membrane protein.
  
     0.552
SHG02976.1
YKOF-related Family.
  
     0.509
SHH05481.1
Bax protein.
  
     0.488
SHG15944.1
Hypothetical protein.
  
     0.478
SHG11562.1
Hypothetical protein.
       0.438
cmoM
S-adenosylmethionine-dependent methyltransferase; Catalyzes the methylation of 5-carboxymethoxyuridine (cmo5U) to form 5-methoxycarbonylmethoxyuridine (mcmo5U) at position 34 in tRNAs; Belongs to the class I-like SAM-binding methyltransferase superfamily. CmoM family.
  
     0.424
SHG02948.1
Nicotinamide mononucleotide transporter.
  
     0.423
Your Current Organism:
Marisediminitalea aggregata
NCBI taxonomy Id: 634436
Other names: Aestuariibacter aggregatus, Aestuariibacter aggregatus Wang et al. 2010, Alteromonas sp. WH169, CGMCC 1.8995, LMG 25283, LMG:25283, M. aggregata, Marisediminitalea aggregata (Wang et al. 2010) Zhang et al., strain WH169
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