STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG14134.1Prepilin-type N-terminal cleavage/methylation domain-containing protein. (178 aa)    
Predicted Functional Partners:
SHF78131.1
MSHA biogenesis protein MshE.
 
 0.823
SHF78232.1
MSHA biogenesis protein MshL.
 
  
 0.820
SHF78293.1
MSHA biogenesis protein MshJ.
 
   
 0.805
SHF77886.1
MSHA biogenesis protein MshO.
 
     0.793
SHF78340.1
Hypothetical protein.
 
  
 0.793
SHF78372.1
MSHA biogenesis protein MshI.
 
   
 0.787
SHF77923.1
MSHA pilin protein MshD.
 
     0.774
SHF88682.1
General secretion pathway protein J.
 
 0.751
SHF88571.1
General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 0.737
SHG90610.1
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB.
  
 0.737
Your Current Organism:
Marisediminitalea aggregata
NCBI taxonomy Id: 634436
Other names: Aestuariibacter aggregatus, Aestuariibacter aggregatus Wang et al. 2010, Alteromonas sp. WH169, CGMCC 1.8995, LMG 25283, LMG:25283, M. aggregata, Marisediminitalea aggregata (Wang et al. 2010) Zhang et al., strain WH169
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.