STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG14922.1Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase. (467 aa)    
Predicted Functional Partners:
SHG14604.1
Capsular exopolysaccharide family.
 
 
 0.999
SHG32686.1
Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.999
SHH21103.1
Uncharacterized protein involved in exopolysaccharide biosynthesis.
  
 
 0.998
SHG05933.1
UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.979
SHG14571.1
Polysaccharide export outer membrane protein.
 
 
 0.979
SHG09505.1
Glycosyltransferase involved in cell wall bisynthesis.
 
 
 0.969
SHH21068.1
Polysaccharide export outer membrane protein.
 
 
 0.969
SHH37616.1
Glycosyltransferase, GT2 family.
  
 
 0.962
SHG09792.1
Polysaccharide export outer membrane protein.
 
 
 0.954
SHG09843.1
exopolysaccharide/PEP-CTERM locus tyrosine autokinase.
 
 
 0.953
Your Current Organism:
Marisediminitalea aggregata
NCBI taxonomy Id: 634436
Other names: Aestuariibacter aggregatus, Aestuariibacter aggregatus Wang et al. 2010, Alteromonas sp. WH169, CGMCC 1.8995, LMG 25283, LMG:25283, M. aggregata, Marisediminitalea aggregata (Wang et al. 2010) Zhang et al., strain WH169
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