Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHF83194.1 | SHG08776.1 | SAMN05216361_0559 | SAMN05216361_1229 | Porin. | Trypsin-like peptidase domain-containing protein. | 0.583 |
SHF83194.1 | SHG16814.1 | SAMN05216361_0559 | SAMN05216361_1523 | Porin. | Serine protease DegS. | 0.583 |
SHF86523.1 | SHG08776.1 | SAMN05216361_0678 | SAMN05216361_1229 | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate. | Trypsin-like peptidase domain-containing protein. | 0.795 |
SHF86523.1 | SHG16814.1 | SAMN05216361_0678 | SAMN05216361_1523 | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate. | Serine protease DegS. | 0.795 |
SHG08776.1 | SHF83194.1 | SAMN05216361_1229 | SAMN05216361_0559 | Trypsin-like peptidase domain-containing protein. | Porin. | 0.583 |
SHG08776.1 | SHF86523.1 | SAMN05216361_1229 | SAMN05216361_0678 | Trypsin-like peptidase domain-containing protein. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate. | 0.795 |
SHG08776.1 | SHG08955.1 | SAMN05216361_1229 | SAMN05216361_1235 | Trypsin-like peptidase domain-containing protein. | Putative PEP-CTERM system TPR-repeat lipoprotein. | 0.879 |
SHG08776.1 | SHG16814.1 | SAMN05216361_1229 | SAMN05216361_1523 | Trypsin-like peptidase domain-containing protein. | Serine protease DegS. | 0.836 |
SHG08776.1 | SHG59966.1 | SAMN05216361_1229 | SAMN05216361_2523 | Trypsin-like peptidase domain-containing protein. | sigma-E factor negative regulatory protein RseA; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplas [...] | 0.890 |
SHG08776.1 | SHH35787.1 | SAMN05216361_1229 | SAMN05216361_4373 | Trypsin-like peptidase domain-containing protein. | Putative PEP-CTERM system TPR-repeat lipoprotein. | 0.859 |
SHG08776.1 | rplI | SAMN05216361_1229 | SAMN05216361_0255 | Trypsin-like peptidase domain-containing protein. | Large subunit ribosomal protein L9; Binds to the 23S rRNA. | 0.583 |
SHG08776.1 | rplT | SAMN05216361_1229 | SAMN05216361_3941 | Trypsin-like peptidase domain-containing protein. | LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.532 |
SHG08776.1 | rpsF | SAMN05216361_1229 | SAMN05216361_0257 | Trypsin-like peptidase domain-containing protein. | Small subunit ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.602 |
SHG08776.1 | secD-2 | SAMN05216361_1229 | SAMN05216361_1999 | Trypsin-like peptidase domain-containing protein. | SecD/SecF fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. | 0.755 |
SHG08955.1 | SHG08776.1 | SAMN05216361_1235 | SAMN05216361_1229 | Putative PEP-CTERM system TPR-repeat lipoprotein. | Trypsin-like peptidase domain-containing protein. | 0.879 |
SHG08955.1 | SHG16814.1 | SAMN05216361_1235 | SAMN05216361_1523 | Putative PEP-CTERM system TPR-repeat lipoprotein. | Serine protease DegS. | 0.606 |
SHG08955.1 | SHH35787.1 | SAMN05216361_1235 | SAMN05216361_4373 | Putative PEP-CTERM system TPR-repeat lipoprotein. | Putative PEP-CTERM system TPR-repeat lipoprotein. | 0.737 |
SHG08955.1 | secD-2 | SAMN05216361_1235 | SAMN05216361_1999 | Putative PEP-CTERM system TPR-repeat lipoprotein. | SecD/SecF fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. | 0.565 |
SHG16814.1 | SHF83194.1 | SAMN05216361_1523 | SAMN05216361_0559 | Serine protease DegS. | Porin. | 0.583 |
SHG16814.1 | SHF86523.1 | SAMN05216361_1523 | SAMN05216361_0678 | Serine protease DegS. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate. | 0.795 |
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