Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHF93768.1 | SHG03089.1 | SAMN05216361_0950 | SAMN05216361_1017 | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | tRNA(Met) cytidine acetyltransferase. | 0.620 |
SHF93768.1 | SHG17944.1 | SAMN05216361_0950 | SAMN05216361_1565 | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 23S rRNA (uracil1939-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | 0.620 |
SHF93768.1 | trmB | SAMN05216361_0950 | SAMN05216361_0354 | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | tRNA (guanine-N7-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.723 |
SHG03089.1 | SHF93768.1 | SAMN05216361_1017 | SAMN05216361_0950 | tRNA(Met) cytidine acetyltransferase. | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.620 |
SHG03089.1 | SHG17944.1 | SAMN05216361_1017 | SAMN05216361_1565 | tRNA(Met) cytidine acetyltransferase. | 23S rRNA (uracil1939-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | 0.596 |
SHG03089.1 | trmB | SAMN05216361_1017 | SAMN05216361_0354 | tRNA(Met) cytidine acetyltransferase. | tRNA (guanine-N7-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.457 |
SHG17894.1 | SHG17920.1 | SAMN05216361_1563 | SAMN05216361_1564 | ATP diphosphatase. | GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 0.972 |
SHG17894.1 | SHG17944.1 | SAMN05216361_1563 | SAMN05216361_1565 | ATP diphosphatase. | 23S rRNA (uracil1939-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | 0.662 |
SHG17894.1 | SHG18083.1 | SAMN05216361_1563 | SAMN05216361_1570 | ATP diphosphatase. | single-stranded-DNA-specific exonuclease. | 0.485 |
SHG17894.1 | acpS | SAMN05216361_1563 | SAMN05216361_1566 | ATP diphosphatase. | Holo-[acyl-carrier protein] synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family. | 0.600 |
SHG17894.1 | pdxJ | SAMN05216361_1563 | SAMN05216361_1567 | ATP diphosphatase. | Pyridoxine 5-phosphate synthase; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate. | 0.597 |
SHG17894.1 | recO | SAMN05216361_1563 | SAMN05216361_1568 | ATP diphosphatase. | DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.446 |
SHG17920.1 | SHG17894.1 | SAMN05216361_1564 | SAMN05216361_1563 | GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | ATP diphosphatase. | 0.972 |
SHG17920.1 | SHG17944.1 | SAMN05216361_1564 | SAMN05216361_1565 | GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 23S rRNA (uracil1939-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | 0.866 |
SHG17920.1 | acpS | SAMN05216361_1564 | SAMN05216361_1566 | GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | Holo-[acyl-carrier protein] synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family. | 0.585 |
SHG17920.1 | pdxJ | SAMN05216361_1564 | SAMN05216361_1567 | GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | Pyridoxine 5-phosphate synthase; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate. | 0.597 |
SHG17920.1 | recO | SAMN05216361_1564 | SAMN05216361_1568 | GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.492 |
SHG17944.1 | SHF93768.1 | SAMN05216361_1565 | SAMN05216361_0950 | 23S rRNA (uracil1939-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.620 |
SHG17944.1 | SHG03089.1 | SAMN05216361_1565 | SAMN05216361_1017 | 23S rRNA (uracil1939-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | tRNA(Met) cytidine acetyltransferase. | 0.596 |
SHG17944.1 | SHG17894.1 | SAMN05216361_1565 | SAMN05216361_1563 | 23S rRNA (uracil1939-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | ATP diphosphatase. | 0.662 |
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