STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG20739.1Sel1 repeat-containing protein. (210 aa)    
Predicted Functional Partners:
SHH17707.1
PilZ domain-containing protein.
  
     0.760
SHG06737.1
Flagellar assembly protein T, C-terminal domain.
  
   
 0.747
SHG41622.1
TolB amino-terminal domain-containing protein.
  
     0.747
SHG41598.1
TolB amino-terminal domain-containing protein.
  
     0.741
SHH32256.1
TIGR03899 family protein.
  
     0.729
SHG74619.1
Hypothetical protein.
  
     0.723
SHG01958.1
OmpA family protein.
  
   
 0.719
SHF75584.1
Hypothetical protein.
 
 
   0.714
SHG06715.1
Hypothetical protein.
  
   
 0.711
SHG50209.1
Hypothetical protein.
  
     0.694
Your Current Organism:
Marisediminitalea aggregata
NCBI taxonomy Id: 634436
Other names: Aestuariibacter aggregatus, Aestuariibacter aggregatus Wang et al. 2010, Alteromonas sp. WH169, CGMCC 1.8995, LMG 25283, LMG:25283, M. aggregata, Marisediminitalea aggregata (Wang et al. 2010) Zhang et al., strain WH169
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.