STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG21432.1HAMP domain-containing protein. (558 aa)    
Predicted Functional Partners:
SHG22713.1
PAS domain S-box-containing protein.
0.943
SHG22835.1
Signal transduction histidine kinase.
 0.939
SHG21456.1
Response regulator c-di-GMP phosphodiesterase, RpfG family, contains REC and HD-GYP domains.
 
  0.938
SHG43833.1
Signal transduction histidine kinase.
0.938
SHG21391.1
DNA binding domain-containing protein, excisionase family.
 
  0.936
SHG37780.1
Putative two-component system response regulator.
 
  0.905
SHG39098.1
Signal transduction histidine kinase.
0.905
SHG16010.1
PAS domain S-box-containing protein.
0.896
SHG92553.1
Two-component system, NarL family, sensor histidine kinase BarA.
0.890
SHG68698.1
Two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB.
0.886
Your Current Organism:
Marisediminitalea aggregata
NCBI taxonomy Id: 634436
Other names: Aestuariibacter aggregatus, Aestuariibacter aggregatus Wang et al. 2010, Alteromonas sp. WH169, CGMCC 1.8995, LMG 25283, LMG:25283, M. aggregata, Marisediminitalea aggregata (Wang et al. 2010) Zhang et al., strain WH169
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